이상혁(李相赫) 교수

생명과학과[대학원] /생명과학전공

이상혁 프로필 사진
이상혁 교수는 생명과학전공/바이오정보학협동과정 소속 교수로 생명정보학 및 유전체학 분야의 연구를 수행하고 있다. 한국생물정보시스템생물학회 회장, 국가생명연구자원정보센터의 센터장, 국가과학기술위원회 생명보건전문위원 등을 역임하였으며, <Nature Genetics>를 비롯한 최상급 전문 학술지에 다수의 논문을 발표하였다. 현재 이화시스템생물학연구소 소장, 바이오정보학협동과정 주임교수이며, 국제염기서열공유자문위원으로 활동하고 있다. 
  • 자연과학대학장
  • 종합과학관 C동 512호
  • 02-3277-2888
  • 면담 가능시간
    • 목10-12시, 금10-12시
연구실적
  • Conserved miR-370-3p/BMP-7 axis regulates the phenotypic change of human vascular smooth muscle cells Scientific reports, 2023, v.13 no.1, 2404
    SCIE Scopus dColl.
  • Symmetry Breaking of Human Pluripotent Stem Cells (hPSCs) in Micropattern Generates a Polarized Spinal Cord-Like Organoid (pSCO) with Dorsoventral Organization Advanced Science, 2023, v.10 no.20, 2301787
    SCIE Scopus dColl.
  • Comprehensive Analysis of Alternative Splicing in Gastric Cancer Identifies Epithelial-Mesenchymal Transition Subtypes Associated with Survival Cancer Research, 2022, v.82 no.4, 543-555
    SCIE dColl.
  • Direct cell-to-cell transfer in stressed tumor microenvironment aggravates tumorigenic or metastatic potential in pancreatic cancer npj Genomic Medicine, 2022, v.7 no.1, 63
    SCIE Scopus dColl.
  • Fluid Shear Stress Regulates the Landscape of microRNAs in Endothelial Cell-Derived Small Extracellular Vesicles and Modulates the Function of Endothelial Cells INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, v.23 no.3, 1314
    SCIE Scopus dColl.
  • Heat shock protein 60 couples an oxidative stress-responsive p38/MK2 signaling and NF-Kappa B survival machinery in cancer cells Redox Biology, 2022, v.51, 102293
    SCIE Scopus dColl.
  • Mice transgenic for human CTLA4-CD28 fusion gene show proliferation and transformation of ATLL-like and AITL-like T cells ONCOIMMUNOLOGY, 2022, v.11 no.1, 2015170
    SCIE Scopus dColl.
  • Nox4-IGF2 Axis Promotes Differentiation of Embryoid Body Cells Into Derivatives of the Three Embryonic Germ Layers Stem Cell Reviews and Reports, 2022, v.18 no.3, 1181-1192
    SCIE Scopus dColl.
  • Production of human spinal-cord organoids recapitulating neural-tube morphogenesis Nature Biomedical Engineering, 2022, v.6 no.4, 435-448
    SCIE Scopus dColl.
  • Elucidating molecular mechanisms of acquired resistance to BRAF inhibitors in melanoma using a microfluidic device and deep sequencing Genomics and Informatics, 2021, v.19 no.1, e2
    Scopus dColl.
  • FCN3 functions as a tumor suppressor of lung adenocarcinoma through induction of endoplasmic reticulum stress Cell Death and Disease, 2021, v.12 no.4, 407
    SCIE Scopus dColl.
  • Genome-scale CRISPR screening identifies cell cycle and protein ubiquitination processes as druggable targets for erlotinib-resistant lung cancer Molecular Oncology, 2021, v.15 no.2, 487-502
    SCIE Scopus dColl.
  • Proprotein convertase subtilisin/kexin Type 9 is required for Ahnak-mediated metastasis of melanoma into lung epithelial cells NEOPLASIA, 2021, v.23 no.9, 993-1001
    SCIE Scopus dColl.
  • iCSDB: An integrated database of CRISPR screens Nucleic Acids Research, 2021 , D956-D961
    SCIE Scopus dColl.
  • Angioimmunoblastic T-cell lymphoma-like lymphadenopathy in mice transgenic for human RHOA with p.Gly17Val mutation ONCOIMMUNOLOGY, 2020, v.9 no.1, 0
    SCIE Scopus dColl.
  • Bioinformatics services for analyzing massive genomic datasets Genomics and Informatics, 2020, v.18 no.1, e8
    Scopus dColl.
  • Characterization of TNNC1 as a Novel Tumor Suppressor of Lung Adenocarcinoma Molecules and cells, 2020, v.43 no.7, 619-631
    Scopus dColl.
  • ChimerDB 4.0: an updated and expanded database of fusion genes Nucleic acids research, 2020, v.48 no.D1, D817-D824
    SCIE Scopus dColl.
  • Earlier-Phased Cancer Immunity Cycle Strongly Influences Cancer Immunity in Operable Never-Smoker Lung Adenocarcinoma iScience, 2020, v.23 no.8, 101386
    Scopus dColl.
  • Genome-scale screening of deubiquitinase subfamily identifies USP3 as a stabilizer of Cdc25A regulating cell cycle in cancer CELL DEATH AND DIFFERENTIATION, 2020, v.27 no.11, 3004-3020
    SCIE Scopus dColl.
  • Glutathione peroxidase-1 regulates adhesion and metastasis of triple-negative breast cancer cells via FAK signaling REDOX BIOLOGY, 2020, v.29, UNSP 101391
    SCIE Scopus dColl.
  • NuA3 HAT antagonizes the Rpd3S and Rpd3L HDACs to optimize mRNA and lncRNA expression dynamics NUCLEIC ACIDS RESEARCH, 2020 , 10753-10767
    SCIE Scopus dColl.
  • PDX models of human lung squamous cell carcinoma: Consideration of factors in preclinical and co-clinical applications Journal of Translational Medicine, 2020, v.18 no.1, 307
    SCIE Scopus dColl.
  • Validity of patient-derived xenograft mouse models for lung cancer based on exome sequencing data Genomics and Informatics, 2020, v.18 no.1, e3
    Scopus dColl.
  • An Integrative Data Mining and Omics-Based Translational Model for the Identification and Validation of Oncogenic Biomarkers of Pancreatic Cancer CANCERS, 2019, v.11 no.2, 155
    SCIE Scopus dColl.
  • CaPSSA: visual evaluation of cancer biomarker genes for patient stratification and survival analysis using mutation and expression data BIOINFORMATICS, 2019, v.35 no.24, 5341-5343
    SCIE Scopus dColl.
  • FusionScan: accurate prediction of fusion genes from RNA-Seq data Genomics & Informatics, 2019, v.17 no.3, e26
    KCI dColl.
  • Fusionscan: Accurate prediction of fusion genes from RNA-seq data Genomics and Informatics, 2019, v.17 no.3, e26
    Scopus dColl.
  • Human cytomegalovirus induces and exploits Roquin to counteract the IRF1-mediated antiviral state PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, v.116 no.37, 18619-18628
    SCIE Scopus dColl.
  • Identification of tumor suppressor miRNAs by integrative miRNA and mRNA sequencing of matched tumor-normal samples in lung adenocarcinoma MOLECULAR ONCOLOGY, 2019, v.13 no.6, 1356-1368
    SCIE Scopus dColl.
  • Proteogenomic Characterization of Human Early-Onset Gastric Cancer Cancer Cell, 2019, v.35 no.1, 111-1.24E12
    SCIE Scopus dColl.
  • An integrated clinical and genomic information system for cancer precision medicine BMC MEDICAL GENOMICS, 2018, v.11
    SCIE Scopus dColl.
  • GEMiCCL: mining genotype and expression data of cancer cell lines with elaborate visualization DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2018, v.
    SCIE Scopus dColl.
  • Integrative Profiling of Alternative Splicing Induced by U2AF1 S34F Mutation in Lung Adenocarcinoma Reveals a Mechanistic Link to Mitotic Stress MOLECULES AND CELLS, 2018, v.41 no.8, 733-741
    SCIE Scopus KCI dColl.
  • Isolation and Functional Examination of the Long Non-Coding RNA Redrum Molecules and cells, 2018, v.41 no.2, 134-139
    Scopus dColl.
  • Rpd3L HDAC links H3K4me3 to transcriptional repression memory NUCLEIC ACIDS RESEARCH, 2018, v.46 no.16, 8261-8274
    SCIE Scopus dColl.
  • Silencing of peroxiredoxin II by promoter methylation is necessary for the survival and migration of gastric cancer cells Experimental & molecular medicine, 2018, v.50 no.2, e443
    SCIE Scopus KCI dColl.
  • Studying cancer immunotherapy using patient-derived xenografts (PDXs) in humanized mice EXPERIMENTAL AND MOLECULAR MEDICINE, 2018, v.50, 99
    SCIE Scopus KCI dColl.
  • Characterization of developmental defects in the forebrain resulting from hyperactivated mTOR signaling by integrative analysis of transcriptomic and proteomic data SCIENTIFIC REPORTS, 2017, v.7
    SCIE Scopus dColl.
  • ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining NUCLEIC ACIDS RESEARCH, 2017, v.45 no.D1, D784-D789
    SCIE Scopus dColl.
  • Integrative analysis of DNA methylation and mRNA expression during differentiation of umbilical cord blood derived mononuclear cells to endothelial cells Gene, 2017, v.635, 48-60
    SCIE Scopus dColl.
  • Interaction of tankyrase and peroxiredoxin II is indispensable for the survival of colorectal cancer cells Nature Communications, 2017, v.8 no.1
    SCIE Scopus dColl.
  • Korean Variant Archive (KOVA): A reference database of genetic variations in the Korean population Scientific Reports, 2017, v.7 no.1
    SCIE Scopus dColl.
  • Frequent CTLA4-CD28 gene fusion in diverse types of T-cell lymphoma HAEMATOLOGICA, 2016, v.101 no.6, 757-763
    SCIE Scopus dColl.
  • MONGKIE: an integrated tool for network analysis and visualization for multi-omics data BIOLOGY DIRECT, 2016, v.11
    SCIE Scopus dColl.
  • Programming of Plant Leaf Senescence with Temporal and Inter-Organellar Coordination of Transcriptome in Arabidopsis PLANT PHYSIOLOGY, 2016, v.171 no.1, 452-467
    SCIE Scopus dColl.
  • Rapid emergence and mechanisms of resistance by U87 glioblastoma cells to doxorubicin in an in vitro tumor microfluidic ecology PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, v.113 no.50, 14283-14288
    SCIE Scopus dColl.
  • A highly recurrent novel missense mutation in CD28 among angioimmunoblastic T-cell lymphoma patients HAEMATOLOGICA, 2015, v.100 no.12, E505-E507
    SCIE Scopus dColl.
  • Characterization of SLC22A18 as a tumor suppressor and novel biomarker in colorectal cancer Oncotarget, 2015, v.6 no.28, 25368-25380
    SCIE Scopus dColl.
  • Cytosolic Hsp60 orchestrates the survival and inflammatory responses of vascular smooth muscle cells in injured aortic vessels Cardiovascular Research, 2015, v.106 no.3, 498-508
    SCIE Scopus dColl.
  • EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering BMC BIOINFORMATICS, 2015, v.16
    SCIE Scopus dColl.
  • Obesity Resistance and Enhanced Insulin Sensitivity in Ahnak(-/-) Mice Fed a High Fat Diet Are Related to Impaired Adipogenesis and Increased Energy Expenditure PLOS ONE, 2015, v.10 no.10
    SCIE Scopus dColl.
  • VAMP2-NRG1 Fusion Gene is a Novel Oncogenic Driver of Non-Small-Cell Lung Adenocarcinoma JOURNAL OF THORACIC ONCOLOGY, 2015, v.10 no.7, 1107-1111
    SCIE Scopus dColl.
  • VAMP2-NRG1 fusion gene is a novel oncogenic driver of non-small cell lung adenocarcinoma CANCER RESEARCH, 2015, v.75
    SCIE Scopus dColl.
  • miRseqViewer: multi-panel visualization of sequence, structure and expression for analysis of microRNA sequencing data BIOINFORMATICS, 2015, v.31 no.4, 596-598
    SCIE Scopus dColl.
  • 2-Cys peroxiredoxins: Emerging hubs determining redox dependency of mammalian signaling networks International Journal of Cell Biology, 2014, v. 2014
    Scopus dColl.
  • A recurrent inactivating mutation in RHOA GTPase in angioimmunoblastic T cell lymphoma Nature Genetics, 2014, v.46 no.4, 371-375
    SCIE Scopus dColl.
  • Compact variant-rich customized sequence database and a fast and sensitive database search for efficient proteogenomic analyses Proteomics, 2014, v.14 no.23-24, 2742-2749
    SCIE Scopus dColl.
  • GEPdb: a database for investigating the ternary association of genotype, gene expression and phenotype BIOINFORMATICS, 2014, v.30 no.17, 2540-2542
    SCIE Scopus dColl.
  • GsGator: An integrated web platform for cross-species gene set analysis BMC Bioinformatics, 2014, v.15 no.1
    SCIE Scopus dColl.
  • IncRNAtor: a comprehensive resource for functional investigation of long non-coding RNAs BIOINFORMATICS, 2014, v.30 no.17, 2480-2485
    SCIE Scopus dColl.
  • Positive feedback loop between Sox2 and Sox6 inhibits neuronal differentiation in the developing central nervous system PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, v.111 no.7, 2794-2799
    SCIE Scopus dColl.
  • [학술지논문] Conserved miR-370-3p/BMP-7 axis regulates the phenotypic change of human vascular smooth muscle cells SCIENTIFIC REPORTS, 2023, v.13 no.2404 , 1-14
    SCIE
  • [학술지논문] Symmetry Breaking of Human Pluripotent Stem Cells (hPSCs) in Micropattern Generates a Polarized Spinal Cord-Like Organoid (pSCO) with Dorsoventral Organization ADVANCED SCIENCE, 2023, v.10 no.2301787 , 1-18
    SCIE
  • [학술지논문] A database of 5305 healthy Korean individuals reveals genetic and clinical implications for an East Asian population EXPERIMENTAL AND MOLECULAR MEDICINE, 2022, v.54 no.11 , 1862-1871
    SCI
  • [학술지논문] Comprehensive Analysis of Alternative Splicing in Gastric Cancer Identifies Epithelial-Mesenchymal Transition Subtypes Associated with Survival CANCER RESEARCH, 2022, v.82 no.4 , 543-555
    SCI
  • [학술지논문] Fluid Shear Stress Regulates the Landscape of microRNAs in Endothelial Cell-Derived Small Extracellular Vesicles and Modulates the Function of Endothelial Cells INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, v.23 no.3 , 1314-1314
    SCIE
  • [학술지논문] Heat shock protein 60 couples an oxidative stress-responsive p38/MK2 signaling and NF-Kappa B survival machinery in cancer cells REDOX BIOLOGY, 2022, v.51 no.102293 , 1-14
    SCIE
  • [학술지논문] Mice transgenic for human CTLA4-CD28 fusion gene show proliferation and transformation of ATLL-like and AITL-like T cells ONCOIMMUNOLOGY, 2022, v.11 no.1 , 2015170-2015170
    SCIE
  • [학술지논문] Nox4-IGF2 Axis Promotes Differentiation of Embryoid Body Cells Into Derivatives of the Three Embryonic Germ Layers STEM CELL REVIEWS AND REPORTS, 2022, v.18 no.3 , 1181-1192
    SCIE
  • [학술지논문] Production of human spinal-cord organoids recapitulating neural-tube morphogenesis NATURE BIOMEDICAL ENGINEERING, 2022, v.6 no.4 , 435-+
    SCIE
  • [학술지논문] Elucidating molecular mechanisms of acquired resistance to BRAF inhibitors in melanoma using a microfluidic device and deep sequencing Genomics and Informatics, 2021, v.19 no.1 , 2-2
    Scopus
  • [학술지논문] FCN3 functions as a tumor suppressor of lung adenocarcinoma through induction of endoplasmic reticulum stress CELL DEATH & DISEASE, 2021, v.12 no.4 , 407-407
    SCIE
  • [학술지논문] Genome-scale CRISPR screening identifies cell cycle and protein ubiquitination processes as druggable targets for erlotinib-resistant lung cancer Molecular Oncology, 2021, v.15 no.2 , 487-502
    SCIE
  • [학술지논문] Proprotein convertase subtilisin/kexin Type 9 is required for Ahnak-mediated metastasis of melanoma into lung epithelial cells NEOPLASIA, 2021, v.23 no.9 , 993-1001
    SCI
  • [학술지논문] iCSDB: an integrated database of CRISPR screens NUCLEIC ACIDS RESEARCH, 2021, v.49 no.D1 , 956-961
    SCI
  • [학술지논문] Angioimmunoblastic T-cell lymphoma-like lymphadenopathy in mice transgenic for human RHOA with p.Gly17Val mutation ONCOIMMUNOLOGY, 2020, v.9 no.1 , 1746553-1746553
    SCIE
  • [학술지논문] Bioinformatics services for analyzing massive genomic datasets Genomics and Informatics, 2020, v.18 no.1 , 1-10
    Scopus
  • [학술지논문] Characterization of TNNC1 as a Novel Tumor Suppressor of Lung Adenocarcinoma MOLECULES AND CELLS, 2020, v.43 no.7 , 619-631
    SCI
  • [학술지논문] ChimerDB 4.0: an updated and expanded database of fusion genes NUCLEIC ACIDS RESEARCH, 2020, v.48 no.D1 , 817-824
    SCI
  • [학술지논문] Earlier-Phased Cancer Immunity Cycle Strongly Influences Cancer Immunity in Operable Never-Smoker Lung Adenocarcinoma iScience, 2020, v.23 no.8 , 1-16
    SCIE
  • [학술지논문] Genome-scale screening of deubiquitinase subfamily identifies USP3 as a stabilizer of Cdc25A regulating cell cycle in cancer CELL DEATH AND DIFFERENTIATION, 2020, v.27 no.11 , 3004-3020
    SCI
  • [학술지논문] Glutathione peroxidase-1 regulates adhesion and metastasis of triple-negative breast cancer cells via FAK signaling REDOX BIOLOGY, 2020, v.29 no.0 , 101391-101391
    SCIE
  • [학술지논문] NuA3 HAT antagonizes the Rpd3S and Rpd3L HDACs to optimize mRNA and lncRNA expression dynamics NUCLEIC ACIDS RESEARCH, 2020, v.48 no.19 , 10753-10767
    SCI
  • [학술지논문] PDX models of human lung squamous cell carcinoma: consideration of factors in preclinical and co-clinical applications JOURNAL OF TRANSLATIONAL MEDICINE, 2020, v.18 no.1 , 1-13
    SCIE
  • [학술지논문] Validity of patient-derived xenograft mouse models for lung cancer based on exome sequencing data Genomics and Informatics, 2020, v.18 no.1 , 1-8
    Scopus
  • [학술지논문] An Integrative Data Mining and Omics-Based Translational Model for the Identification and Validation of Oncogenic Biomarkers of Pancreatic Cancer CANCERS, 2019, v.11 no.2 , 1-19
    SCIE
  • [학술지논문] CaPSSA: visual evaluation of cancer biomarker genes for patient stratification and survival analysis using mutation and expression data BIOINFORMATICS, 2019, v.35 no.24 , 5341-5343
    SCI
  • [학술지논문] FusionScan: accurate prediction of fusion genes from RNA-Seq data Genomics & Informatics, 2019, v.17 no.3 , e26-e26
    Scopus
  • [학술지논문] Human cytomegalovirus induces and exploits Roquin to counteract the IRF1-mediated antiviral state PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, v.116 no.37 , 18619-18628
    SCI
  • [학술지논문] Identification of tumor suppressor miRNAs by integrative miRNA and mRNA sequencing of matched tumor-normal samples in lung adenocarcinoma Molecular Oncology, 2019, v.13 no.6 , 1356-1368
    SCIE
  • [학술지논문] Proteogenomic Characterization of Human Early-Onset Gastric Cancer CANCER CELL, 2019, v.35 no.1 , 111-111
    SCI
강의
  • 2024-1학기

    • 일반생물학Ⅰ

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      • 학수번호 38920분반 01
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    • 유전체정보학

      • 학수번호 G17016분반 01
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    • 생명과학인턴십II

      • 학수번호 38219분반 01
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      • 학수번호 G17226분반 01
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      • 학수번호 35829분반 01
      • 4학년 ( 2학점 , 3시간) 화 1~1 (종A203) , 목 1~1 (종A203)
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      • 학수번호 38920분반 01
      • 학년 ( 3학점 , 3시간) 월 3~4
      • 전공필수,원격강의
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      • 수강불가:자연대,엘텍공대,의대,간호대,약대 재학생 및 일반생물학, 일반생물학I,II 수강생
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      • 학수번호 35309분반 04
      • 2학년 ( 2학점 , 3시간) 금 6~7
    • 생명과학실험I

      • 학수번호 35309분반 05
      • 2학년 ( 2학점 , 3시간) 목 4~5 (종A205)
      • 추가개설
    • 고급생명과학실험캡스톤디자인I

      • 학수번호 35829분반 01
      • 4학년 ( 2학점 , 3시간) 월 1~1 (종A205) , 수 1~1 (종A205)
    • 생명과학연구개론

      • 학수번호 36337분반 01
      • 3학년 ( 3학점 , 3시간) 월 3~3 , 수 2~2
      • 수강신청 변경 기간에 수강인원 증원 예정(수강희망자 모두 수용 예정)
    • 21C바이오산업

      • 학수번호 37713분반 01
      • 4학년 ( 1학점 , 1시간) 수 6~6
    • 생명과학연구Ⅰ

      • 학수번호 G16932분반 01
      • 학년 ( 3학점 , 3시간)
    • 생명정보분석및프로그래밍

      • 학수번호 G16987분반 01
      • 학년 ( 3학점 , 3시간) 화 4~5 (종C515)
학력

Cornell University Ph.D.(화학)